Question How well did GeneMANIA perform (hints: use GeneCards ( ), PubMed ( ))? Answer The top functions predicted by GeneMANIA for GRN were related to lysosome and vacuole. Question GRN is the central node of this network: which function would you predict for GRN? Answer : a function related to lysosome and vacuole "lysosomal function", "vacuolar lumen", "vacuolar part" are significant under a FDR threshold less than 0.0001. Question What are the functions significantly associated with this network? Answer the list of the functions associated with the network are listed in the above screenshot. Integrated Assignment Bonus - Automation.PART 5: GSEA (run and create an enrichment map).PART 3: save as Generic Enrichment Map output (NE).PART 2: save as Generic Enrichment Map output (BE).Exercise 3: MORE DETAILS AND SCREENSHOTS.EXERCISE 2 ANSWERS: DETAILED STEPS AND SCREENSHOTS.EXERCISE 1 ANSWERS: DETAILED EXPLANATION AND SCREENSHOTS.EXERCISE 3: QUESTIONS AND STEPS TO FOLLOW.EXERCISE 2: QUESTIONS AND STEPS TO FOLLOW.EXERCISE 1: QUESTIONS AND STEPS TO FOLLOW.Module 6 Lab: GeneMANIA (Cytoscape version).Create a metatargetome using iRegulon and merge 2 networks in Cytoscape. Module 5 Lab: Gene Regulation and Motif Analysis Practical Lab.Module 4: In-depth Analysis of Networks and Pathways.Step 5 - Step through notebook to run the analysis.Module 3: Network Visualization and Analysis with Cytoscape.Module 2: Finding Over-represented Pathways (Veronique Voisin).Module 1 - Introduction to Pathway and Network Analysis (Gary Bader).Pre-Workshop Materials and Laptop Setup Instructions.Pathway and Network Analysis of -Omics Data (July 2020).
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